PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang03g06140.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 110aa    MW: 12006.5 Da    PI: 10.5797
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang03g06140.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.41.1e-201464256
             AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56
                    +y+GVr ++ +gr++AeIrd ++    ++r++lg+f+t+eeAa a++ a+++l+g+
  Vang03g06140.1 14 HYRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTFDTPEEAALAYDGAARSLRGA 64
                    69*******.**********883....5*************************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.23E-281473No hitNo description
PfamPF008471.1E-131463IPR001471AP2/ERF domain
PROSITE profilePS5103222.7211471IPR001471AP2/ERF domain
SuperFamilySSF541715.56E-231472IPR016177DNA-binding domain
SMARTSM003804.1E-351477IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-321472IPR001471AP2/ERF domain
PRINTSPR003672.7E-111526IPR001471AP2/ERF domain
PRINTSPR003672.7E-113753IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 110 aa     Download sequence    Send to blast
MMASSSSSGS REGHYRGVRK RPWGRYAAEI RDPWKKTRVW LGTFDTPEEA ALAYDGAARS  60
LRGAKAKTNF PPSPALCLDL NAPSSDHRWP NEMIGSKQGD GNARRGKVC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-221471563ATERF1
3gcc_A1e-221471563ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00645PBMTransfer from LOC_Os05g41760Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150381e-152AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014517947.15e-61PREDICTED: ethylene-responsive transcription factor 12
SwissprotQ94ID64e-40ERF81_ARATH; Ethylene-responsive transcription factor 12
TrEMBLA0A0S3S2P92e-61A0A0S3S2P9_PHAAN; Uncharacterized protein
STRINGGLYMA13G31010.12e-54(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33034189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.14e-40ERF domain protein 12